rs517558 chr1:234479175 G>T
- Sequence
ggcgtgtgcgatgcgtgcgcacag[G/T]accggccggcccctacgtgcgcgt
- ASB in cell types
- A549 (lung carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- JUN_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.36 | 0.91 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.37 | n/a | 2.50 | -2.86 | Concordant |
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Motif analysis
