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rs518471 chr18:618124 T>C

Sequence
ctgaagagtacgtttggtttctta[T/C]ctgtgctgtgtcctgtttgcatgt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NCOA2_HUMAN ATF3_HUMAN ILF3_HUMAN EP400_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOA2_HUMAN 3.26 n/a 1.8·10-91.00 1.33 n/a n/a
ATF3_HUMAN 2.98 n/a 5.3·10-81.00 1.33 n/a No Hit
ILF3_HUMAN 2.88 -2.95 1.1·10-71.00 1.00 n/a n/a
EP400_HUMAN 2.68 n/a 4.0·10-71.00 1.33 n/a n/a
ZEB2_HUMAN 2.79 n/a 5.2·10-71.00 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI electroencephalogram traits
GRASP 2 hour glucose,  diastolic blood pressure (dbp),  hdl cholesterol,  neuroblastoma (brain cancer),  obesity with early age of onset (age >2),  systolic blood pressure (sbp),  transmission distortion

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