rs522468 chr1:36188076 T>G
- Sequence
tctggagatccctccctttcccca[T/G]ctctgccctttccccagtagggcc
- ASB in cell types
- foreskin keratinocyte breast tumor tissue
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.41 | 0.81 | 1.34 | n/a | No Hit | |||
| ESR1_HUMAN | -3.82 | 2.06 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP alcohol dependence, alcohol dependence (early age of onset), comorbid depressive syndrome and alcohol dependence, hypertension (early onset hypertension)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood