rs522980 chr19:56121424 G>A
- Sequence
atcccggccaccgcccccagctct[G/A]tggtgcccggcgggcgcctgaggg
- ASB in cell types
- GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXK2_HUMAN RFOX2_HUMAN ELF1_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.30 | 2.41 | 1.17 | n/a | n/a | |||
| RFOX2_HUMAN | 1.89 | n/a | 1.33 | n/a | n/a | |||
| ELF1_HUMAN | 1.46 | 0.02 | 1.33 | n/a | No Hit | |||
| GABPA_HUMAN | 1.07 | 0.12 | 1.33 | n/a | No Hit |
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