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rs524877 chr1:170659294 G>C

Sequence
agttattgtaaaggaggcagggca[G/C]aaggaatggttggaaagtgggtct
ASB in cell types
GM12878 (female B-cells)
ASB for transcription factors
ENL_HUMAN IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ENL_HUMAN 2.24 -2.04 3.2·10-31.00 1.33 n/a n/a
IKZF2_HUMAN 1.28 -0.84 0.041.00 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Cerebellum Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Ovary Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid

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