rs525507 chr6:116445410 G>C
- Sequence
tggttattcagctggcttttctgc[G/C]acacctgcacacgtggagagtcaa
- ASB in cell types
- keratinocytes
- ASB for transcription factors
- SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -3.78 | 2.93 | 1.50 | -0.15 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP birth weight, diabetic retinopathy in type 2 diabetes mellitus, height, maternal transmission distortion, obesity with early age of onset (age >2)
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Testis, Whole_Blood