rs526122 chr19:13621551 A>G
- Sequence
gccatcgtcatccttgcagtcagc[A/G]gggggcactgaggcacagagggct
- ASB in cell types
- K562 (myelogenous leukemia) SUM159PT (pleiomorphic breast carcinoma) coronary artery smooth muscle
- ASB for transcription factors
- CTCF_HUMAN ATF3_HUMAN JUN_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.86 | 0.12 | 1.67 | -3.85 | Concordant | |||
| ATF3_HUMAN | 3.27 | n/a | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 2.13 | -2.37 | 1.33 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.57 | n/a | 2.00 | n/a | n/a | |||
| JUND_HUMAN | 0.91 | -0.48 | 1.33 | n/a | No Hit |
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Motif analysis
