rs526794 chr15:65304800 G>A
- Sequence
cttgttccgacaaggctatataaa[G/A]ctgttaaaaaatcagattgacttc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- SRF_HUMAN NCOA1_HUMAN HDAC1_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | 1.12 | -0.00 | 1.79 | -3.13 | Concordant | |||
| NCOA1_HUMAN | -0.98 | 1.86 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 0.29 | 1.82 | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 0.48 | 1.44 | 2.08 | n/a | No Hit | |||
| SIN3A_HUMAN | 1.21 | 0.05 | 1.60 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Spleen, Testis, Whole_Blood