rs526897 chr2:218568874 G>A
- Sequence
ggatggcggctacggcggctcatt[G/A]ttttccgctgcaggggtgctgaag
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) HEK293T (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CREB1_HUMAN GABPA_HUMAN GABP1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.37 | -0.38 | 1.75 | n/a | No Hit | |||
| GABPA_HUMAN | 1.52 | -0.06 | 1.78 | -0.07 | Weak Concordant | |||
| GABP1_HUMAN | 2.23 | n/a | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 1.36 | -0.94 | 1.78 | n/a | n/a | |||
| NR2F6_HUMAN | 1.84 | -0.94 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GRASP body mass index (bmi), fasting insulin, height, homa-b, suicide attempts in major depressive disorder, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood