rs530081 chr18:35041267 A>G
- Sequence
agctgctggcgtggtcacgccgcg[A/G]ccctgtgcgaattgaggcgaggtg
- ASB in cell types
- K562 (myelogenous leukemia) thymus-derived CD34- cells CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- MGAP_HUMAN LMBL2_HUMAN BC11B_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | n/a | 1.43 | 2.50 | n/a | n/a | |||
| LMBL2_HUMAN | n/a | 1.44 | 2.50 | n/a | n/a | |||
| BC11B_HUMAN | n/a | 3.13 | 2.50 | n/a | n/a | |||
| STAT1_HUMAN | -3.24 | 2.38 | 2.50 | n/a | No Hit | |||
| NRF1_HUMAN | n/a | 2.41 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood