rs530703 chr20:64131533 T>C
- Sequence
gtattgacacgctaggggtggaca[T/C]gcccagtgtggatgccctgcagtg
- ASB in cell types
- VCaP (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.57 | 1.44 | 1.55 | n/a | No Hit | |||
| CTCF_HUMAN | 0.57 | 0.89 | 1.47 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hip bone mineral density (bmd), neuroblastoma (brain cancer), spine bone mineral density (bmd), sporadic creutzfeldt-jakob disease
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid