rs532098 chr6:32610275 G>A
- Sequence
gaagtccctggtcagttttaaaag[G/A]gaagggcatgactatgacgctgga
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) CD14+ monocytes
- ASB for transcription factors
- FOXK2_HUMAN ATF3_HUMAN STAT1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.09 | n/a | 2.25 | n/a | n/a | |||
| ATF3_HUMAN | 2.88 | n/a | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.66 | -1.00 | 2.50 | n/a | No Hit | |||
| SMCA4_HUMAN | 1.77 | n/a | 3.00 | n/a | n/a | |||
| RING2_HUMAN | 2.35 | n/a | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP amyotrophic lateral sclerosis (als), crohns disease, generalized vitiligo, generalized vitiligo age of onset, generalized vitiligo with concomitant other autoimmune disorder, generalized vitiligo without concomitant other autoimmune disorder, pediatric asthma, sarcoidosis, sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood