ADASTRA v1.6.10
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rs532425
chr2:218569471
A
>
G
Sequence
ttgcatctgacttaggttctctgc[A/G]tttaaaacttttcctcgacacatc
ASB in cell types
GM12878 (female B-cells)
HEK293 (embryonic kidney)
ASB for transcription factors
FOXK2_HUMAN
ZFX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN
2.01
n/a
6.8·10
-3
1.00
1.50
n/a
n/a
ZFX_HUMAN
-0.07
0.93
0.95
0.04
1.56
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Anterior_cingulate_cortex_BA24
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Liver
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)