rs532446 chr1:67686755 C>T
- Sequence
agccgagatgtgctagtttcatca[C/T]caggattttctgtggtacagaaca
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) SaOS2 (osteosarcoma)
- ASB for transcription factors
- ATF3_HUMAN CEBPB_HUMAN ZN316_HUMAN CEBPG_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | -0.98 | 0.86 | 1.83 | -1.29 | Weak Discordant | |||
| CEBPB_HUMAN | 0.50 | 1.52 | 1.58 | n/a | No Hit | |||
| ZN316_HUMAN | -0.14 | 2.32 | 2.00 | n/a | n/a | |||
| CEBPG_HUMAN | -0.62 | 1.67 | 1.61 | 1.31 | Weak Concordant | |||
| P53_HUMAN | -0.01 | 1.71 | 2.01 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd