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rs533577 chr3:39448160 C>T

Sequence
gtgactgggcaagttactgaagat[C/T]tttgagtttgagtttcaacatcta
ASB in cell types
A549 (lung carcinoma) esophagus muscularis mucosa
ASB for transcription factors
RAD21_HUMAN SMC3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN 0.04 0.71 0.740.01 1.73 n/a n/a
SMC3_HUMAN -0.37 0.73 0.960.02 1.82 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Pancreas Pituitary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Stomach Testis Thyroid Whole_Blood

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