rs534892 chr6:31796165 G>C
- Sequence
tttgagcctcatctcctcatgtat[G/C]aaaaaagggtgacggccgggcgca
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- PBX2_HUMAN CTBP1_HUMAN EGR1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX2_HUMAN | n/a | 2.93 | 3.00 | n/a | No Hit | |||
| CTBP1_HUMAN | -0.76 | 3.05 | 2.17 | n/a | n/a | |||
| EGR1_HUMAN | 0.41 | 3.03 | 3.11 | n/a | No Hit | |||
| HDAC1_HUMAN | n/a | 2.75 | 3.67 | n/a | n/a | |||
| NCOR1_HUMAN | -0.99 | 2.66 | 4.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood