rs535565 chr11:126193166 C>T
- Sequence
gatgggagaggagacagtgccagc[C/T]gctctccccgtgggcctcccccct
- ASB in cell types
- HepG2 (hepatoblastoma) cranial neural crest cells
- ASB for transcription factors
- NR2F6_HUMAN SMAD4_HUMAN TCF7_HUMAN BCL6_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2F6_HUMAN | 2.80 | -2.21 | 1.33 | n/a | n/a | |||
| SMAD4_HUMAN | 3.03 | n/a | 1.50 | -3.85 | Concordant | |||
| TCF7_HUMAN | 2.25 | -2.16 | 1.33 | n/a | No Hit | |||
| BCL6_HUMAN | 1.99 | -1.91 | 1.50 | n/a | No Hit | |||
| EP300_HUMAN | 1.77 | n/a | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood