rs538954 chr11:65989337 T>C
- Sequence
gttagtaacaaaggattctggtac[T/C]tggcaactcattgtggattagcaa
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- RAD21_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.32 | 1.25 | 1.78 | n/a | n/a | |||
| MNT_HUMAN | 0.55 | 1.28 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP crohns disease, combined control dataset, height, infant head circumference, ldl cholesterol, major depressive disorder
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood