rs539114 chr1:148334986 A>T
- Sequence
gcccctgtgctgcctcatctacat[A/T]gaagtcgccctatccgtgatgtca
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells) H1 (embryonic stem cells)
- ASB for transcription factors
- CREB1_HUMAN FOXK2_HUMAN TBP_HUMAN PO2F2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.46 | -0.44 | 1.56 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.00 | -0.89 | 1.78 | n/a | n/a | |||
| TBP_HUMAN | 1.81 | n/a | 1.92 | n/a | No Hit | |||
| PO2F2_HUMAN | 2.00 | -1.78 | 1.50 | n/a | No Hit | |||
| E4F1_HUMAN | 2.19 | n/a | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 8
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid