ADASTRA v1.6.10
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adastra.autosome.org
rs539181
chr1:179931064
C
>
A
Sequence
atgaggtcatgctgcagatagcaa[C/A]atatttctggcgccttccatctga
ASB in cell types
HEK293 (embryonic kidney)
CWR22 (prostate carcinoma)
ASB for transcription factors
ATF2_HUMAN
ANDR_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN
2.37
n/a
0.01
1.00
2.00
n/a
No Hit
ANDR_HUMAN
1.08
-0.28
0.01
0.83
2.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
infant head circumference
,
lp-pla2 activity
,
lp-pla2 mass
,
total cholesterol
GTEx eQTL
Artery_Aorta
,
Artery_Tibial
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)