rs539889 chr1:17849436 C>T
- Sequence
agccatggggaggggctccatgca[C/T]aggctggggccttgggaatctcga
- ASB in cell types
- AG10803 (fibroblasts) RWPE2
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.53 | -0.27 | 1.31 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, fasting insulin, homa-ir, ldl cholesterol change with statins, total cholesterol change with statins