rs540587 chr15:43185915 G>C
- Sequence
tccttccgggctccccttgcctca[G/C]ttcctccagcgtcccgaccccttt
- ASB in cell types
- Jurkat (T-cells) adrenal gland esophagus squamous epithelium Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.07 | 1.18 | 1.46 | n/a | No Hit | |||
| GABPA_HUMAN | -3.64 | 2.79 | 1.50 | 4.62 | Concordant |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, hdl cholesterol, hdl cholesterol change with statins, parkinsons disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood