rs5412 chr17:7280727 G>A
- Sequence
ctgcggctcctcgctcgccctcca[G/A]gtggcagcacaaccctgcgcttcc
- ASB in cell types
- epithelial cell of prostate esophagus squamous epithelium spleen IPSC-derived bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.37 | -0.20 | 1.39 | -6.55 | Concordant | |||
| ESR1_HUMAN | 1.93 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, resistance to kuru in aged women despite likely exposure, triglycerides change with statins, waist hip ratio
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood