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rs541490 chr16:88928808 T>C

Sequence
gagaggcacgggtgggtgactgga[T/C]ggccactgaaaaggtgccatctga
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN CREB1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.20 -0.33 3.7·10-61.00 2.56 n/a No Hit
CREB1_HUMAN 1.42 -1.06 0.031.00 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Artery_Aorta Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Heart_Atrial_Appendage Pancreas Thyroid

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