rs542336 chr9:133133862 T>C
- Sequence
gtaggggcaggccctggctgggtg[T/C]gaggcccattgtttacaaacactg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) keratinocytes upper lobe of left lung GM12878 (female B-cells)
- ASB for transcription factors
- SNAI2_HUMAN EP300_HUMAN CTCF_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.15 | n/a | 1.50 | n/a | No Hit | |||
| EP300_HUMAN | 1.78 | 0.06 | 1.37 | n/a | n/a | |||
| CTCF_HUMAN | 0.59 | 0.67 | 1.39 | n/a | No Hit | |||
| FOXK2_HUMAN | n/a | 3.72 | 6.00 | n/a | n/a | |||
| CREB1_HUMAN | 1.45 | -0.55 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood