rs543555 chr6:33599845 T>C
- Sequence
gaaccggatgaagacaggatgagc[T/C]gtcaccagggatcctggcctcggg
- ASB in cell types
- ICN12 (primary pre-B acute lymphomablastic leukemia) MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- BCL6_HUMAN PKNX1_HUMAN AP2C_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL6_HUMAN | 2.56 | n/a | 1.50 | n/a | No Hit | |||
| PKNX1_HUMAN | 1.88 | -2.11 | 1.33 | n/a | No Hit | |||
| AP2C_HUMAN | 1.95 | -1.43 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid