ADASTRA v1.6.10
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rs544941
chr1:111769712
A
>
T
Sequence
gtttccagttatttctacccgaag[A/T]ttatttggtctgtgggtctgcagt
ASB in cell types
neutrophils
CD34+ hematopoietic stem cells
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View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+4 others)
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Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
neutrophils
1.92
-0.39
9.8·10
-3
1.00
1.67
CD34+ hematopoietic stem cells
1.88
-1.59
0.03
1.00
2.00
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5
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Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
suicide attempts in bipolar disorder (substance abuse/dependence)
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Tibial
,
Esophagus_Gastroesophageal_Junction
,
Muscle_Skeletal
,
Nerve_Tibial
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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