rs546388 chr5:172901130 C>T
- Sequence
ggggtcagtgccccctcccgccac[C/T]atgagattgtaacttaaggaaatg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) pancreas
- ASB for transcription factors
- JUN_HUMAN VEZF1_HUMAN NCOR1_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.33 | 0.27 | 1.96 | n/a | No Hit | |||
| VEZF1_HUMAN | 2.53 | n/a | 2.00 | n/a | No Hit | |||
| NCOR1_HUMAN | 1.66 | -2.14 | 2.00 | n/a | n/a | |||
| COT1_HUMAN | 2.11 | n/a | 2.00 | n/a | No Hit | |||
| NR2C1_HUMAN | 1.92 | -1.68 | 2.00 | n/a | No Hit |
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