rs549609438 chr1:43172585 C>A
- Sequence
ccgggggaggggaaaggggaggga[C/A]aaggggaggggaaaggggagggac
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- GABP1_HUMAN SP2_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | 1.38 | -1.31 | 1.00 | n/a | n/a | |||
| SP2_HUMAN | 2.29 | -2.11 | 2.00 | -2.86 | Concordant | |||
| GABPA_HUMAN | 1.06 | -0.41 | 1.39 | n/a | No Hit |
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Motif analysis
