rs550015 chr11:65418877 A>G
- Sequence
agcaatcccgggcaaaacagaccg[A/G]aacccctccctcgaggagatcaag
- ASB in cell types
- A549 (lung carcinoma) breast tumor tissue GM12878 (female B-cells) CD14+ monocytes
- ASB for transcription factors
- ESR1_HUMAN STAT1_HUMAN GABPA_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -3.01 | 2.72 | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 2.66 | 2.50 | n/a | No Hit | |||
| GABPA_HUMAN | -2.85 | 2.31 | 1.44 | 4.03 | Concordant | |||
| JUN_HUMAN | -0.41 | 1.37 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.04 | 2.65 | 1.17 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood