rs553217 chr8:101445921 T>C
- Sequence
ttctggccaggatgcccaaataaa[T/C]aatcatcacaagggtacttgatga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- PRGR_HUMAN ESR1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | 0.06 | 2.01 | 1.79 | n/a | No Hit | |||
| ESR1_HUMAN | -0.03 | 1.39 | 1.78 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.29 | 1.20 | 1.50 | 1.05 | Weak Concordant |
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Motif analysis
