rs554371 chr1:184843996 C>T
- Sequence
caagtttactacacaacttggata[C/T]gatttaaagcaagcttgactgttc
- ASB in cell types
- GM12878 (female B-cells) K562 (myelogenous leukemia) Th1-cells
- ASB for transcription factors
- TBX21_HUMAN IKZF1_HUMAN MEIS2_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -1.45 | 1.50 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | -1.24 | 1.61 | 1.33 | n/a | No Hit | |||
| MEIS2_HUMAN | n/a | 2.37 | 2.50 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.48 | 1.45 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | -1.25 | 1.66 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pituitary, Thyroid