rs555598158 chr4:183256893 C>T
- Sequence
gagtgtgatcctacagcccccccc[C/T]ccccccccccggctctgttcctgc
- ASB in cell types
- epithelial cell of prostate neural cell VCaP (prostate carcinoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.33 | 2.14 | 1.26 | -0.32 | Weak Discordant | |||
| RAD21_HUMAN | -2.49 | 2.54 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | -1.32 | 1.67 | 1.33 | n/a | n/a |
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Motif analysis
