rs555615570 chr5:109689433 C>A
- Sequence
attgacccagcggctgctgcgccg[C/A]cgctgtctcctcctgctcgtggcg
- ASB in cell types
- neural cell
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -1.37 | 1.49 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.87 | 0.87 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.37 | 0.65 | 1.13 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Testis, Thyroid, Whole_Blood