rs555752 chr11:125625626 G>T
- Sequence
gagcgaagcccgcagccccgcctg[G/T]aagcgcagcgcggtcggtcgcgcg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) CD14+ monocytes HEK293T (embryonic kidney)
- ASB for transcription factors
- MNT_HUMAN NCOR1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -0.50 | 1.98 | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | -1.34 | 1.54 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.56 | -0.62 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid