rs555925 chr3:193826570 G>T
- Sequence
gctgcaaacttgccttggcctcca[G/T]gggactcacagcttggacattctc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) pancreas
- ASB for transcription factors
- RFX1_HUMAN CTCF_HUMAN RFX5_HUMAN BMI1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 2.14 | n/a | 1.50 | 0.39 | Weak Discordant | |||
| CTCF_HUMAN | 2.17 | -3.00 | 1.33 | -4.35 | Concordant | |||
| RFX5_HUMAN | 2.11 | -2.34 | 1.33 | n/a | No Hit | |||
| BMI1_HUMAN | 2.06 | n/a | 1.50 | n/a | n/a |
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Motif analysis
