rs557477 chr1:5286414 T>G
- Sequence
ctgagtgctgggcaccagctccac[T/G]tcttccatcctatgtgccaaagtc
- ASB in cell types
- VCaP (prostate carcinoma) esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.11 | 0.44 | 1.45 | n/a | No Hit | |||
| RAD21_HUMAN | 1.01 | -1.06 | 1.39 | n/a | n/a |
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