rs55803185 chr5:138352585 G>A
- Sequence
gctgtcgccccgctccagagcgcg[G/A]ggggcgctgtgcggggcccaggct
- ASB in cell types
- E14 retina HEK293T (embryonic kidney) GM12878 (female B-cells) cranial neural crest cells
- ASB for transcription factors
- ZFX_HUMAN AP2A_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.58 | 1.96 | 2.00 | n/a | No Hit | |||
| AP2A_HUMAN | 1.71 | -1.28 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.31 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood