rs55830819 chr3:197034920 G>T
- Sequence
tcttgctgacgggttgtggtgtga[G/T]cacctgcagtagtgtgatgtcaga
- ASB in cell types
- keratinocytes MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- SNAI2_HUMAN CREB1_HUMAN ZN629_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -3.64 | 3.00 | 1.33 | -2.71 | Discordant | |||
| CREB1_HUMAN | 2.77 | n/a | 1.50 | n/a | No Hit | |||
| ZN629_HUMAN | 1.90 | n/a | 1.50 | n/a | n/a |
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Motif analysis
