rs55863806 chr1:70355197 G>A
- Sequence
aatgaaggccaaacaattaaaagc[G/A]gaggcggggaggtgggttgcacac
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ZNF24_HUMAN HDAC1_HUMAN SMCA4_HUMAN PF21A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | -0.15 | 1.37 | 1.58 | n/a | n/a | |||
| HDAC1_HUMAN | -0.94 | 1.77 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | -1.30 | 1.89 | 2.00 | n/a | n/a | |||
| PF21A_HUMAN | -2.03 | 1.95 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood