rs55869852 chr8:143733348 G>A
- Sequence
tgtccccagggaagggtccaggcc[G/A]tgcccagcacccagactccagcta
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- HDAC1_HUMAN MNT_HUMAN NR2C1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | 1.76 | -0.61 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 1.18 | -0.62 | 1.77 | n/a | n/a | |||
| NR2C1_HUMAN | 2.04 | -2.40 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.16 | 0.41 | 1.56 | n/a | No Hit | |||
| EGR1_HUMAN | 1.62 | -0.03 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid