rs55949227 chr21:44479854 C>T
- Sequence
gggcataacagaaggctcacactc[C/T]tgtcttccggtcacacttcactgt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) esophagus squamous epithelium Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN ETV1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.05 | 0.37 | 1.37 | n/a | No Hit | |||
| ETV1_HUMAN | 1.21 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Lung, Pancreas, Skin_Sun_Exposed_Lower_leg, Whole_Blood