rs55958309 chr7:22550432 A>G
- Sequence
gcaggtagcagctttggccacagg[A/G]aggcgcatctgcactgccgggttc
- ASB in cell types
- GM12878 (female B-cells) IPSC-derived bipolar neuron bipolar neuron SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN EZH2_HUMAN RAD21_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.15 | 1.99 | 1.63 | 0.46 | Weak Concordant | |||
| EZH2_HUMAN | 2.18 | -0.00 | 1.44 | n/a | n/a | |||
| RAD21_HUMAN | -1.64 | 1.90 | 1.83 | n/a | n/a | |||
| IKZF1_HUMAN | -2.08 | 2.00 | 1.33 | n/a | No Hit | |||
| ZBTB2_HUMAN | -2.08 | 2.23 | 1.33 | n/a | n/a |
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Motif analysis
