rs56066739 chr2:130816977 C>T
- Sequence
aaagagaaaacaagctgcaaactg[C/T]gagtacatatttgcaatacaaaaa
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.20 | 1.26 | 1.91 | 2.54 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cortex, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Thyroid