rs56108623 chr9:95876024 C>T
- Sequence
tgttacatgcagccgggctcggcc[C/T]ctccccctggccggatggatccgt
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) liver breast tumor tissue
- ASB for transcription factors
- GABPA_HUMAN FOXK2_HUMAN THA11_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | -1.20 | 2.21 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | 3.04 | 0.82 | 1.33 | n/a | n/a | |||
| THA11_HUMAN | -1.52 | 1.30 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.33 | 0.68 | 1.25 | -2.37 | Discordant | |||
| ESR1_HUMAN | 1.93 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
