rs56277800 chr1:16905243 T>G
- Sequence
tatggttatcaaagtggtttactg[T/G]aaggctgagggctatgcattctat
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) D341 Med (medulloblastoma)
- ASB for transcription factors
- CTCF_HUMAN T2AG_HUMAN MNT_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.67 | -0.23 | 1.41 | n/a | No Hit | |||
| T2AG_HUMAN | 1.85 | n/a | 1.33 | n/a | n/a | |||
| MNT_HUMAN | 2.64 | -2.29 | 3.08 | n/a | n/a | |||
| IKZF1_HUMAN | 2.68 | n/a | 4.17 | n/a | No Hit | |||
| NDF1_HUMAN | 2.57 | -3.59 | 1.50 | n/a | No Hit |
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