rs562939112 chr1:40374602 T>C
- Sequence
tgcgtgcgtgcgtgcgtgcgtgtg[T/C]gtgtgtgtgtgtgtgtgtgtgtga
- ASB in cell types
- GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) neural cell
- ASB for transcription factors
- RAD21_HUMAN FOXK2_HUMAN MTA2_HUMAN ZN444_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.73 | -1.79 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.41 | -1.68 | 1.33 | n/a | n/a | |||
| MTA2_HUMAN | 1.45 | -1.73 | 1.33 | n/a | n/a | |||
| ZN444_HUMAN | 2.50 | n/a | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | 0.63 | -1.08 | 1.33 | n/a | No Hit |
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