rs563525 chr17:39153102 A>G
- Sequence
gtcctgcgggtttcctctttcccc[A/G]gcctgcccaccccctgtctccgac
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) epidermal keratinocytes HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN SPI1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 0.63 | 1.62 | n/a | No Hit | |||
| SMC3_HUMAN | -0.00 | 1.06 | 2.81 | n/a | n/a | |||
| SPI1_HUMAN | 1.91 | -1.19 | 2.25 | n/a | No Hit | |||
| RAD21_HUMAN | 0.12 | 1.28 | 2.69 | n/a | n/a | |||
| RING2_HUMAN | -1.87 | 2.22 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 5