rs564109 chr5:172897894 A>T
- Sequence
tggcagtggctgacgcagagttaa[A/T]ccattcctgattcctagaattatc
- ASB in cell types
- A549 (lung carcinoma) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- JUN_HUMAN GCR_HUMAN RAD21_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.74 | -0.23 | 1.96 | n/a | No Hit | |||
| GCR_HUMAN | 2.05 | -2.55 | 2.17 | n/a | No Hit | |||
| RAD21_HUMAN | 1.31 | -0.62 | 2.00 | n/a | n/a | |||
| BCL3_HUMAN | 1.17 | -0.24 | 2.00 | n/a | n/a | |||
| EP300_HUMAN | 1.30 | -0.05 | 1.89 | n/a | n/a |
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