rs565159 chr18:26621633 G>A
- Sequence
taggaaacttgcacaagggggcag[G/A]gcagagccgcggtgaacgccaacc
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte RWPE2 epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.07 | 0.55 | 1.32 | -0.20 | Weak Concordant | |||
| RAD21_HUMAN | 1.91 | 0.65 | 1.41 | n/a | n/a | |||
| STAT1_HUMAN | 2.06 | -0.20 | 2.00 | n/a | No Hit |
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Motif analysis
